The Marine Microbial Eukaryote Transcriptome Sequencing Project (MMETSP): Illuminating the Functional Diversity of Eukaryotic Life in the Oceans through Transcriptome Sequencing
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Keeling, P.J, et al. The Marine Microbial Eukaryote Transcriptome Sequencing Project (mmetsp): Illuminating the Functional Diversity of Eukaryotic Life In the Oceans Through Transcriptome Sequencing. Public Library of Science, 2014. https://doi.org/10.17615/cc6r-9c49APA
Keeling, P., Burki, F., Wilcox, H., Allam, B., Allen, E., Amaral Zettler, L., Armbrust, E., Archibald, J., Bharti, A., Bell, C., Beszteri, B., Bidle, K., Cameron, C., Campbell, L., Caron, D., Cattolico, R., Collier, J., Coyne, K., Davy, S., Deschamps, P., Dyhrman, S., Edvardsen, B., Gates, R., Gobler, C., Greenwood, S., Guida, S., Jacobi, J., Jakobsen, K., James, E., Jenkins, B., John, U., Johnson, M., Juhl, A., Kamp, A., Katz, L., Kiene, R., Kudryavtsev, A., Leander, B., Lin, S., Lovejoy, C., Lynn, D., Marchetti, A., Mc Manus, G., Nedelcu, A., Menden Deuer, S., Miceli, C., Mock, T., Montresor, I., Moran, M., Murray, S., Nadathur, G., Nagai, S., Ngam, P., Palenik, B., Pawlowski, J., Petroni, G., Piganeau, G., Posewitz, M., Rengefors, K., Romano, G., Rumpho, M., Rynearson, T., Schilling, K., Schroeder, D., Simpson, A., Slamovits, C., Smith, D., Smith, G., Smith, S., Sosik, H., Stief, P., Theriot, E., Twary, S., Umale, P., Vaulot, D., Wawrik, B., Wheeler, G., Wilson, W., Xu, Y., Zingone, A., & Worden, A. (2014). The Marine Microbial Eukaryote Transcriptome Sequencing Project (MMETSP): Illuminating the Functional Diversity of Eukaryotic Life in the Oceans through Transcriptome Sequencing. Public Library of Science. https://doi.org/10.17615/cc6r-9c49Chicago
Keeling, P.J., F Burki, H.M Wilcox, B Allam, E.E Allen, L.A Amaral Zettler, E.V Armbrust et al. 2014. The Marine Microbial Eukaryote Transcriptome Sequencing Project (mmetsp): Illuminating the Functional Diversity of Eukaryotic Life In the Oceans Through Transcriptome Sequencing. Public Library of Science. https://doi.org/10.17615/cc6r-9c49- Creator
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Keeling, P.J.
- Other Affiliation: University of British Columbia
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Burki, F.
- Other Affiliation: University of British Columbia
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Wilcox, H.M.
- Other Affiliation: Monterey Bay Aquarium Research Institute
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Allam, B.
- Other Affiliation: Stony Brook University
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Allen, E.E.
- Other Affiliation: University of California, San Diego
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Amaral-Zettler, L.A.
- Other Affiliation: Brown University
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Armbrust, E.V.
- Other Affiliation: University of Washington
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Archibald, J.M.
- Other Affiliation: Dalhousie University
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Bharti, A.K.
- Other Affiliation: National Center for Genome Resources
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Bell, C.J.
- Other Affiliation: National Center for Genome Resources
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Beszteri, B.
- Other Affiliation: Alfred Wegener Institute Helmholtz Center for Polar and Marine Research
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Bidle, K.D.
- Other Affiliation: Rutgers University
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Cameron, C.T.
- Other Affiliation: National Center for Genome Resources
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Campbell, L.
- Other Affiliation: Texas A and M University
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Caron, D.A.
- Other Affiliation: University of Southern California
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Cattolico, R.A.
- Other Affiliation: University of Washington
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Collier, J.L.
- Other Affiliation: Stony Brook University
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Coyne, K.
- Other Affiliation: University of Delaware
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Davy, S.K.
- Other Affiliation: Victoria University of Wellington
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Deschamps, P.
- Other Affiliation: Université Paris-Sud
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Dyhrman, S.T.
- Other Affiliation: Columbia University
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Edvardsen, B.
- Other Affiliation: University of Oslo
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Gates, R.D.
- Other Affiliation: University of Hawaii
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Gobler, C.J.
- Other Affiliation: Stony Brook University
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Greenwood, S.J.
- Other Affiliation: University of Prince Edward Island
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Guida, S.M.
- Other Affiliation: National Center for Genome Resources
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Jacobi, J.L.
- Other Affiliation: National Center for Genome Resources
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Jakobsen, K.S.
- Other Affiliation: University of Oslo
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James, E.R.
- Other Affiliation: University of British Columbia
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Jenkins, B.
- Other Affiliation: University of Rhode Island
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John, U.
- Other Affiliation: Alfred Wegener Institute Helmholtz Center for Polar and Marine Research
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Johnson, M.D.
- Other Affiliation: Woods Hole Oceanographic Institution
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Juhl, A.R.
- Other Affiliation: Columbia University
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Kamp, A.
- Other Affiliation: Jacobs University Bremen
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Katz, L.A.
- Other Affiliation: Smith College
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Kiene, R.
- Other Affiliation: University of South Alabama
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Kudryavtsev, A.
- Other Affiliation: University of Geneva
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Leander, B.S.
- Other Affiliation: University of British Columbia
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Lin, S.
- Other Affiliation: University of Connecticut
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Lovejoy, C.
- Other Affiliation: Université Laval
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Lynn, D.
- Other Affiliation: University of British Columbia
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Marchetti, A.
- Affiliation: College of Arts and Sciences, Department of Marine Sciences
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McManus, G.
- Other Affiliation: University of Connecticut
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Nedelcu, A.M.
- Other Affiliation: University of New Brunswick
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Menden-Deuer, S.
- Other Affiliation: University of Rhode Island
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Miceli, C.
- Other Affiliation: University of Camerino
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Mock, T.
- Other Affiliation: University of East Anglia
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Montresor, M., , Naples, Italy
- Other Affiliation: Stazione Zoologica Anton Dohrn
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Moran, M.A.
- Other Affiliation: University of Georgia
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Murray, S.
- Other Affiliation: University of Technology, Sydney
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Nadathur, G.
- Other Affiliation: University of Puerto Rico
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Nagai, S.
- Other Affiliation: National Research Institute of Fisheries Science,
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Ngam, P.B.
- Other Affiliation: National Center for Genome Resources
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Palenik, B.
- Other Affiliation: University of California, San Diego
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Pawlowski, J.
- Other Affiliation: University of Geneva
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Petroni, G.
- Other Affiliation: University of Pisa
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Piganeau, G.
- Other Affiliation: Sorbonne Universités
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Posewitz, M.C.
- Other Affiliation: Colorado School of Mines
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Rengefors, K.
- Other Affiliation: Lund University
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Romano, G.
- Other Affiliation: Stazione Zoologica Anton Dohrn
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Rumpho, M.E.
- Other Affiliation: University of Connecticut
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Rynearson, T.
- Other Affiliation: University of Rhode Island
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Schilling, K.B.
- Other Affiliation: National Center for Genome Resources
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Schroeder, D.C.
- Other Affiliation: The Marine Biological Association of the United Kingdom
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Simpson, A.G.B.
- Other Affiliation: Dalhousie University
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Slamovits, C.H.
- Other Affiliation: Dalhousie University
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Smith, D.R.
- Other Affiliation: University of Western Ontario
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Smith, G.J.
- Other Affiliation: Moss Landing Marine Laboratories
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Smith, S.R.
- Other Affiliation: University of California, San Diego
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Sosik, H.M.
- Other Affiliation: Woods Hole Oceanographic Institution
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Stief, P.
- Other Affiliation: Max Planck Institute for Marine Microbiology
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Theriot, E.
- Other Affiliation: University of Texas, Austin
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Twary, S.N.
- Other Affiliation: Los Alamos National Laboratory
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Umale, P.E.
- Other Affiliation: National Center for Genome Resources
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Vaulot, D.
- Other Affiliation: Station Biologique
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Wawrik, B.
- Other Affiliation: University of Oklahoma
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Wheeler, G.L.
- Other Affiliation: Plymouth Marine Laboratory
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Wilson, W.H.
- Other Affiliation: Bigelow Laboratory for Ocean Sciences
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Xu, Y.
- Other Affiliation: Princeton University
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Zingone, A.
- Other Affiliation: Stazione Zoologica Anton Dohrn
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Worden, A.Z.
- Other Affiliation: Monterey Bay Aquarium Research Institute
- Abstract
- Microbial ecology is plagued by problems of an abstract nature. Cell sizes are so small and population sizes so large that both are virtually incomprehensible. Niches are so far from our everyday experience as to make their very definition elusive. Organisms that may be abundant and critical to our survival are little understood, seldom described and/or cultured, and sometimes yet to be even seen. One way to confront these problems is to use data of an even more abstract nature: molecular sequence data. Massive environmental nucleic acid sequencing, such as metagenomics or metatranscriptomics, promises functional analysis of microbial communities as a whole, without prior knowledge of which organisms are in the environment or exactly how they are interacting. But sequence-based ecological studies nearly always use a comparative approach, and that requires relevant reference sequences, which are an extremely limited resource when it comes to microbial eukaryotes.
- Date of publication
- 2014
- Keyword
- DOI
- Identifier
- Resource type
- Article
- Rights statement
- In Copyright
- License
- CC0 1.0 Universal
- Journal title
- PLoS Biology
- Journal volume
- 12
- Journal issue
- 6
- Language
- English
- Version
- Publisher
- ISSN
- 1544-9173
- Publisher
- Public Library of Science
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