Thermal Unfolding Pathway of PHD2 Catalytic Domain in Three Different PHD2 Species: Computational Approaches
Public Deposited- Creator
- Hadi-Alijanvand, Hamid
- Proctor, Elizabeth A.
- Goliaei, Bahram
- Dokholyan, Nikolay V.
- Moosavi-Movahedi, Ali A.
- Abstract
- Prolyl hydroxylase domain 2 containing protein (PHD2) is a key protein in regulation of angiogenesis and metastasis. In normoxic condition, PHD2 triggers the degradation of hypoxia-inducible factor 1 (HIF-1α) that induces the expression of hypoxia response genes. Therefore the correct function of PHD2 would inhibit angiogenesis and consequent metastasis of tumor cells in normoxic condition. PHD2 mutations were reported in some common cancers. However, high levels of HIF-1α protein were observed even in normoxic metastatic tumors with normal expression of wild type PHD2. PHD2 malfunctions due to protein misfolding may be the underlying reason of metastasis and invasion in such cases. In this study, we scrutinize the unfolding pathways of the PHD2 catalytic domain’s possible species and demonstrate the properties of their unfolding states by computational approaches. Our study introduces the possibility of aggregation disaster for the prominent species of PHD2 during its partial unfolding. This may justify PHD2 inability to regulate HIF-1α level in some normoxic tumor types.
- Date of publication
- 2012
- Keyword
- Molecular Cell Biology
- Humans
- Research Article
- R
- Computational Biology
- Catalytic Domain
- Molecular Dynamics
- Molecular Dynamics Simulation
- Chemistry
- Medicine
- Q
- Computational Chemistry
- Temperature
- Biophysics
- Science
- Protein Structure
- Protein Folding
- Proteins
- Biophysics Simulations
- Macromolecular Structure Analysis
- Regulatory Proteins
- Procollagen-Proline Dioxygenase
- Biochemistry
- Biology
- Physics
- DOI
- Identifier
- PMCID: PMC3471951
- PMID: 23077544
- Publisher DOI: https://doi.org/10.1371/journal.pone.0047061
- Onescience id: 7190293e6a35c7b88d3fb459ed7c037c1e9e21d4
- Resource type
- Article
- Rights statement
- In Copyright
- Journal title
- PloS One
- Journal volume
- 7
- Journal issue
- 10
- Page start
- e47061
- Language
- English
- ISSN
- 1932-6203
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