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Discovery of novel variants in genotyping arrays improves genotype retention and reduces ascertainment bias

Creator: Didion, John P, Yang, Hyuna, Sheppard, Keith, Fu, Chen-Ping, McMillan, Leonard, de Villena, Fernando, Churchill, Gary A

Abstract Background High-density genotyping arrays that measure hybridization of genomic DNA fragments to allele-specific oligonucleotide probes are widely used to genotype single nucleotide polymorphisms (SNPs) in genetic studies, including human (more)

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1471-2164-13-34.pdf

Collection: BioMed Central

Date Deposited: 2012-08-23

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Additional file 10: Fraction of VINO calls in each HapMap population

Collection: BioMed Central

Date Deposited: 2012-08-23

Date Created: 2012-08-23

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Additional file 12: Genotype may be resolved for the target position in some VINOs

Collection: BioMed Central

Date Deposited: 2012-08-23

Date Created: 2012-08-23

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Additional file 13: VINOs can be used to identify structural variation

Collection: BioMed Central

Date Deposited: 2012-08-23

Date Created: 2012-08-23

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Additional file 14: Summary of unaligned probe sets

Collection: BioMed Central

Date Deposited: 2012-08-23

Date Created: 2012-08-23

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Additional file 1: Description of 351 mouse samples

Collection: BioMed Central

Date Deposited: 2012-08-23

Date Created: 2012-08-23

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Additional file 3: Summary of sequencing of predicted VINOs

Collection: BioMed Central

Date Deposited: 2012-08-23

Date Created: 2012-08-23

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Additional file 8: MouseDivGeno identifies population-specific VINOs in human samples

Collection: BioMed Central

Date Deposited: 2012-08-23

Date Created: 2012-08-23

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