Collections > UNC Scholarly Publications > BioMed Central > Discovery of novel variants in genotyping arrays improves genotype retention and reduces ascertainment bias > Additional file 7: Observed vs. predicted genotype calls in (C57BL/ 6JxCAST/EiJ)F1, grouped by OTV position
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Observed vs. predicted genotype calls in (C57BL/ 6JxCAST/EiJ)F1, grouped by OTV position. Genotype calls in (C57BL/ 6JxCAST/EiJ)F1 are categorized by whether they are concordant (first panel) or discordant (remaining panels), the observed vs. expected genotypes, and the position of the OTV (if any) within the probe set. F1 genotypes are predicted based on CAST/EiJ genotypes, as C57BL/6J is always expected to be AA homozygous.