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UNC Scholarly Publications

Collection of open access scholarly materials produced by the UNC community.

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Comparison of phylogenetic trees through alignment of embedded evolutionary distances (2 items)

Creator: Choi, Kwangbom; Gomez, Shawn

Collection: BioMed Central

Date Deposited: 2012-08-23

Date Created: 2009-12-15

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Comparison of RNA-Seq by poly (A) capture, ribosomal RNA depletion, and DNA microarray for expression profiling (7 items)

Creator: Zhao, Wei; He, Xiaping; Hoadley, Katherine; Parker, Joel; Hayes, David; et al.

Collection: BioMed Central

Date Deposited: 2015-08-26

Date Created: 2014-06-02

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CpGAVAS, an integrated web server for the annotation, visualization, analysis, and GenBank submission of completely sequenced chloroplast genome sequences

Creator: Liu, Chang; Shi, Linchun; Zhu, Yingjie; Chen, Haimei; Zhang, Jianhui; et al.

Collection: BioMed Central

Date Deposited: 2013-01-11

Date Created: 2012-12-20

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EGFR associated expression profiles vary with breast tumor subtype (6 items)

Creator: Hoadley, Katherine; Weigman, Victor J; Fan, Cheng; Sawyer, Lynda R; He, Xiaping; et al.

Collection: BioMed Central

Date Deposited: 2012-09-06

Date Created: 2007-07-31

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Enhancing metabolomic data analysis with Progressive Consensus Alignment of NMR Spectra (PCANS) (4 items)

Creator: Staab, Jennifer M; O'Connell, Thomas M; Gomez, Shawn

Collection: BioMed Central

Date Deposited: 2012-08-23

Date Created: 2010-03-09

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Gene processing control loops suggested by sequencing, splicing, and RNA folding

Creator: Jeffries, Clark D; Perkins, Diana; Guan, Xiaojun

Collection: BioMed Central

Date Deposited: 2012-08-23

Date Created: 2010-12-20

pdf  (542.6 KB)

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HiView: an integrative genome browser to leverage Hi-C results for the interpretation of GWAS variants (2 items)

Creator: Xu, Zheng; Zhang, Guosheng; Duan, Qing; Chai, Shengjie; Zhang, Baqun; et al.

Collection: BioMed Central

Date Deposited: 2016-03-11

Date Created: 2016-03-11

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Identification of microRNAs associated with allergic airway disease using a genetically diverse mouse population

Creator: Rutledge, Holly; Baran-Gale, Jeanette; Pardo-Manuel de Villena, Fernando; Chesler, Elissa J; Churchill, Gary A; et al.

Collection: BioMed Central

Date Deposited: 2015-09-22

Date Created: 2015-08-25

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Identification of mRNA isoform switching in breast cancer (11 items)

Creator: Zhao, Wei; Hoadley, Katherine; Parker, Joel; Perou, Charles

Collection: BioMed Central

Date Deposited: 2016-03-04

Date Created: 2016-03-03

pdf  (3.6 MB)

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LAIT: a local ancestry inference toolkit (2 items)

Creator: Hui, Daniel; Fang, Zhou; Lin, Jerome; Duan, Qing; Li, Yun; et al.

Collection: BioMed Central

Date Deposited: 2017-09-08

Date Created: 2017-09-06

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MATCHER: manifold alignment reveals correspondence between single cell transcriptome and epigenome dynamics (2 items)

Creator: Welch, Joshua D; Hartemink, Alexander J; Prins, Jan

Collection: BioMed Central

Date Deposited: 2017-07-27

Date Created: 2017-07-24

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MT-Toolbox: improved amplicon sequencing using molecule tags (5 items)

Creator: Yourstone, Scott M; Lundberg, Derek S; Dangl, Jeffery L.; Jones, Corbin

Collection: BioMed Central

Date Deposited: 2015-08-26

Date Created: 2014-08-22

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PTIGS-IdIt, a system for species identification by DNA sequences of the psbA-trnH intergenic spacer region (5 items)

Creator: Liu, Chang; Liang, Dong; Gao, Ting; Pang, Xiaohui; Song, Jingyuan; et al.

Collection: BioMed Central

Date Deposited: 2012-08-23

Date Created: 2011-11-30

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SLICER: inferring branched, nonlinear cellular trajectories from single cell RNA-seq data (11 items)

Creator: Welch, Joshua D; Hartemink, Alexander J; Prins, Jan

Collection: BioMed Central

Date Deposited: 2016-05-27

Date Created: 2016-05-23

pdf  (1.5 MB)

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Structural similarity-based predictions of protein interactions between HIV-1 and Homo sapiens (6 items)

Creator: Doolittle, Janet M; Gomez, Shawn

Collection: BioMed Central

Date Deposited: 2012-08-23

Date Created: 2010-04-28

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tDRmapper: challenges and solutions to mapping, naming, and quantifying tRNA-derived RNAs from human small RNA-sequencing data

Creator: Selitsky, Sara R; Sethupathy, Praveen

Collection: BioMed Central

Date Deposited: 2016-11-25

Date Created: 2015-11-04

pdf  (2.6 MB)